Implement Phase 1: Foundation

- Set up TypeScript project with strict mode
- Configure tsup build system (ESM output)
- Configure vitest for testing (36 tests passing)
- Configure ESLint with flat config for TypeScript
- Implement Commander.js CLI with all 4 commands:
  - init: Configure API keys with validation
  - new: Create new Ralph Method project (stub)
  - validate: Validate PROMPT.md files
  - research: Research topics via Perplexity (stub)
- Implement config management:
  - Keys stored in ~/.ralph-generator/config.json
  - File permissions set to 600
  - Environment variables override file config
- Implement logging utility with verbosity levels
- Implement atomic file writes utility

All Phase 1 acceptance criteria met.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

vitest.config.ts

@@ -0,0 +1,12 @@
+import { defineConfig } from 'vitest/config';
+
+export default defineConfig({
+  test: {
+    globals: true,
+    coverage: {
+      provider: 'v8',
+      reporter: ['text', 'json', 'html'],
+      exclude: ['node_modules', 'dist', '**/*.test.ts'],
+    },
+  },
+});