Implement Phase 1: Foundation

- Set up TypeScript project with strict mode
- Configure tsup build system (ESM output)
- Configure vitest for testing (36 tests passing)
- Configure ESLint with flat config for TypeScript
- Implement Commander.js CLI with all 4 commands:
  - init: Configure API keys with validation
  - new: Create new Ralph Method project (stub)
  - validate: Validate PROMPT.md files
  - research: Research topics via Perplexity (stub)
- Implement config management:
  - Keys stored in ~/.ralph-generator/config.json
  - File permissions set to 600
  - Environment variables override file config
- Implement logging utility with verbosity levels
- Implement atomic file writes utility

All Phase 1 acceptance criteria met.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

tsup.config.ts

@@ -0,0 +1,20 @@
+import { defineConfig } from 'tsup';
+
+export default defineConfig({
+  entry: ['src/index.ts'],
+  format: ['esm'],
+  dts: true,
+  clean: true,
+  splitting: false,
+  sourcemap: false,
+  target: 'node20',
+  platform: 'node',
+  // Don't bundle dependencies - use them from node_modules at runtime
+  external: [
+    'commander',
+    'inquirer',
+    'chalk',
+    'ora',
+    '@anthropic-ai/sdk',
+  ],
+});